Index _ | A | B | C | D | E | F | G | I | J | K | L | M | N | O | P | R | S | W _ _check_dt() (cubnm.sim.base.SimGroup method) (cubnm.sim.jr.JRSimGroup method) (cubnm.sim.kuramoto.KuramotoSimGroup method) (cubnm.sim.rww.rWWSimGroup method) (cubnm.sim.rwwex.rWWExSimGroup method) (cubnm.sim.wc.WCSimGroup method) _evaluate() (cubnm.optimize.BNMProblem method) _get_save_data() (cubnm.sim.base.SimGroup method) (cubnm.sim.jr.JRSimGroup method) (cubnm.sim.kuramoto.KuramotoSimGroup method) (cubnm.sim.rww.rWWSimGroup method) (cubnm.sim.rwwex.rWWExSimGroup method) (cubnm.sim.wc.WCSimGroup method) _get_sim_params() (cubnm.optimize.BNMProblem method) _get_test_configs() (cubnm.sim.base.SimGroup class method) (cubnm.sim.jr.JRSimGroup class method) (cubnm.sim.kuramoto.KuramotoSimGroup class method) (cubnm.sim.rww.rWWSimGroup class method) (cubnm.sim.rwwex.rWWExSimGroup class method) (cubnm.sim.wc.WCSimGroup class method) _get_test_instance() (cubnm.sim.base.SimGroup class method) (cubnm.sim.jr.JRSimGroup class method) (cubnm.sim.kuramoto.KuramotoSimGroup class method) (cubnm.sim.rww.rWWSimGroup class method) (cubnm.sim.rwwex.rWWExSimGroup class method) (cubnm.sim.wc.WCSimGroup class method) _get_X() (cubnm.optimize.BNMProblem method) _get_Xt() (cubnm.optimize.BNMProblem method) _plot_space_1d() (cubnm.optimize.CMAESOptimizer method) (cubnm.optimize.GridOptimizer method) (cubnm.optimize.NSGA2Optimizer method) (cubnm.optimize.Optimizer method) (cubnm.optimize.PymooOptimizer method) _plot_space_2d() (cubnm.optimize.CMAESOptimizer method) (cubnm.optimize.GridOptimizer method) (cubnm.optimize.NSGA2Optimizer method) (cubnm.optimize.Optimizer method) (cubnm.optimize.PymooOptimizer method) _plot_space_3d() (cubnm.optimize.CMAESOptimizer method) (cubnm.optimize.GridOptimizer method) (cubnm.optimize.NSGA2Optimizer method) (cubnm.optimize.Optimizer method) (cubnm.optimize.PymooOptimizer method) _problem_evaluate() (cubnm.sim.base.SimGroup method) (cubnm.sim.jr.JRSimGroup method) (cubnm.sim.kuramoto.KuramotoSimGroup method) (cubnm.sim.rww.rWWSimGroup method) (cubnm.sim.rwwex.rWWExSimGroup method) (cubnm.sim.wc.WCSimGroup method) _problem_init() (cubnm.sim.base.SimGroup method) (cubnm.sim.jr.JRSimGroup method) (cubnm.sim.kuramoto.KuramotoSimGroup method) (cubnm.sim.rww.rWWSimGroup method) (cubnm.sim.rwwex.rWWExSimGroup method) (cubnm.sim.wc.WCSimGroup method) _process_out() (cubnm.sim.base.MultiSimGroupMixin method) (cubnm.sim.base.SimGroup method) (cubnm.sim.jr.JRSimGroup method) (cubnm.sim.kuramoto.KuramotoSimGroup method) (cubnm.sim.rww.rWWSimGroup method) (cubnm.sim.rwwex.rWWExSimGroup method) (cubnm.sim.wc.WCSimGroup method) _set_default_params() (cubnm.sim.base.SimGroup method) (cubnm.sim.jr.JRSimGroup method) (cubnm.sim.kuramoto.KuramotoSimGroup method) (cubnm.sim.rww.rWWSimGroup method) (cubnm.sim.rwwex.rWWExSimGroup method) (cubnm.sim.wc.WCSimGroup method) _set_sim_params() (cubnm.optimize.BNMProblem method) A avail_gpus() (in module cubnm.utils) B batch_optimize() (in module cubnm.optimize) BNMProblem (class in cubnm.optimize) C calculate_fc() (in module cubnm.utils) calculate_fcd() (in module cubnm.utils) cdf_2d_2d_right() (in module cubnm.utils) clear() (cubnm.sim.base.SimGroup method) (cubnm.sim.jr.JRSimGroup method) (cubnm.sim.kuramoto.KuramotoSimGroup method) (cubnm.sim.rww.rWWSimGroup method) (cubnm.sim.rwwex.rWWExSimGroup method) (cubnm.sim.wc.WCSimGroup method) CMAESOptimizer (class in cubnm.optimize) create_multi_sim_group() (in module cubnm.sim.base) cubnm module cubnm.datasets module cubnm.optimize module cubnm.sim module cubnm.sim.base module cubnm.sim.jr module cubnm.sim.kuramoto module cubnm.sim.rww module cubnm.sim.rwwex module cubnm.sim.wc module cubnm.utils module D default_params (cubnm.sim.jr.JRSimGroup attribute) (cubnm.sim.kuramoto.KuramotoSimGroup attribute) (cubnm.sim.rww.rWWSimGroup attribute) (cubnm.sim.rwwex.rWWExSimGroup attribute) (cubnm.sim.wc.WCSimGroup attribute) E eval() (cubnm.optimize.BNMProblem method) F fc_corr_device() (in module cubnm.utils) fcd_ks_device() (in module cubnm.utils) G get_bw_params() (in module cubnm.utils) get_config() (cubnm.optimize.BNMProblem method) (cubnm.optimize.CMAESOptimizer method) (cubnm.optimize.GridOptimizer method) (cubnm.optimize.NSGA2Optimizer method) (cubnm.optimize.Optimizer method) (cubnm.optimize.PymooOptimizer method) (cubnm.sim.base.SimGroup method) (cubnm.sim.jr.JRSimGroup method) (cubnm.sim.kuramoto.KuramotoSimGroup method) (cubnm.sim.rww.rWWSimGroup method) (cubnm.sim.rwwex.rWWExSimGroup method) (cubnm.sim.wc.WCSimGroup method) get_noise() (cubnm.sim.base.SimGroup method) (cubnm.sim.jr.JRSimGroup method) (cubnm.sim.kuramoto.KuramotoSimGroup method) (cubnm.sim.rww.rWWSimGroup method) (cubnm.sim.rwwex.rWWExSimGroup method) (cubnm.sim.wc.WCSimGroup method) get_sim_fc() (cubnm.sim.base.SimGroup method) (cubnm.sim.jr.JRSimGroup method) (cubnm.sim.kuramoto.KuramotoSimGroup method) (cubnm.sim.rww.rWWSimGroup method) (cubnm.sim.rwwex.rWWExSimGroup method) (cubnm.sim.wc.WCSimGroup method) get_sim_fcd() (cubnm.sim.base.SimGroup method) (cubnm.sim.jr.JRSimGroup method) (cubnm.sim.kuramoto.KuramotoSimGroup method) (cubnm.sim.rww.rWWSimGroup method) (cubnm.sim.rwwex.rWWExSimGroup method) (cubnm.sim.wc.WCSimGroup method) get_state_averages() (cubnm.sim.base.SimGroup method) (cubnm.sim.jr.JRSimGroup method) (cubnm.sim.kuramoto.KuramotoSimGroup method) (cubnm.sim.rww.rWWSimGroup method) (cubnm.sim.rwwex.rWWExSimGroup method) (cubnm.sim.wc.WCSimGroup method) global_param_names (cubnm.sim.jr.JRSimGroup attribute) (cubnm.sim.kuramoto.KuramotoSimGroup attribute) (cubnm.sim.rww.rWWSimGroup attribute) (cubnm.sim.rwwex.rWWExSimGroup attribute) (cubnm.sim.wc.WCSimGroup attribute) GridOptimizer (class in cubnm.optimize) I is_jupyter() (in module cubnm.utils) J JRSimGroup (class in cubnm.sim.jr) K KuramotoSimGroup (class in cubnm.sim.kuramoto) L load_bold() (in module cubnm.datasets) load_fc() (in module cubnm.datasets) load_fcd() (in module cubnm.datasets) load_maps() (in module cubnm.datasets) load_sc() (in module cubnm.datasets) M model_name (cubnm.sim.jr.JRSimGroup attribute) (cubnm.sim.kuramoto.KuramotoSimGroup attribute) (cubnm.sim.rww.rWWSimGroup attribute) (cubnm.sim.rwwex.rWWExSimGroup attribute) (cubnm.sim.wc.WCSimGroup attribute) module cubnm cubnm.datasets cubnm.optimize cubnm.sim cubnm.sim.base cubnm.sim.jr cubnm.sim.kuramoto cubnm.sim.rww cubnm.sim.rwwex cubnm.sim.wc cubnm.utils multiobj (cubnm.optimize.CMAESOptimizer attribute) (cubnm.optimize.NSGA2Optimizer attribute) MultiSimGroupMixin (class in cubnm.sim.base) N n_noise (cubnm.sim.jr.JRSimGroup attribute) (cubnm.sim.kuramoto.KuramotoSimGroup attribute) (cubnm.sim.rww.rWWSimGroup attribute) (cubnm.sim.rwwex.rWWExSimGroup attribute) (cubnm.sim.wc.WCSimGroup attribute) NSGA2Optimizer (class in cubnm.optimize) O optimize() (cubnm.optimize.CMAESOptimizer method) (cubnm.optimize.GridOptimizer method) (cubnm.optimize.NSGA2Optimizer method) (cubnm.optimize.Optimizer method) (cubnm.optimize.PymooOptimizer method) Optimizer (class in cubnm.optimize) P plot_history() (cubnm.optimize.CMAESOptimizer method) (cubnm.optimize.GridOptimizer method) (cubnm.optimize.NSGA2Optimizer method) (cubnm.optimize.Optimizer method) (cubnm.optimize.PymooOptimizer method) plot_space() (cubnm.optimize.CMAESOptimizer method) (cubnm.optimize.GridOptimizer method) (cubnm.optimize.NSGA2Optimizer method) (cubnm.optimize.Optimizer method) (cubnm.optimize.PymooOptimizer method) post_init() (cubnm.sim.base.SimGroup method) (cubnm.sim.jr.JRSimGroup method) (cubnm.sim.kuramoto.KuramotoSimGroup method) (cubnm.sim.rww.rWWSimGroup method) (cubnm.sim.rwwex.rWWExSimGroup method) (cubnm.sim.wc.WCSimGroup method) PymooOptimizer (class in cubnm.optimize) R regional_param_names (cubnm.sim.jr.JRSimGroup attribute) (cubnm.sim.kuramoto.KuramotoSimGroup attribute) (cubnm.sim.rww.rWWSimGroup attribute) (cubnm.sim.rwwex.rWWExSimGroup attribute) (cubnm.sim.wc.WCSimGroup attribute) run() (cubnm.sim.base.MultiSimGroupMixin method) (cubnm.sim.base.SimGroup method) (cubnm.sim.jr.JRSimGroup method) (cubnm.sim.kuramoto.KuramotoSimGroup method) (cubnm.sim.rww.rWWSimGroup method) (cubnm.sim.rwwex.rWWExSimGroup method) (cubnm.sim.wc.WCSimGroup method) rWWExSimGroup (class in cubnm.sim.rwwex) rWWSimGroup (class in cubnm.sim.rww) S save() (cubnm.optimize.CMAESOptimizer method) (cubnm.optimize.GridOptimizer method) (cubnm.optimize.NSGA2Optimizer method) (cubnm.optimize.Optimizer method) (cubnm.optimize.PymooOptimizer method) (cubnm.sim.base.SimGroup method) (cubnm.sim.jr.JRSimGroup method) (cubnm.sim.kuramoto.KuramotoSimGroup method) (cubnm.sim.rww.rWWSimGroup method) (cubnm.sim.rwwex.rWWExSimGroup method) (cubnm.sim.wc.WCSimGroup method) score() (cubnm.sim.base.SimGroup method) (cubnm.sim.jr.JRSimGroup method) (cubnm.sim.kuramoto.KuramotoSimGroup method) (cubnm.sim.rww.rWWSimGroup method) (cubnm.sim.rwwex.rWWExSimGroup method) (cubnm.sim.wc.WCSimGroup method) sel_state_var (cubnm.sim.jr.JRSimGroup attribute) (cubnm.sim.kuramoto.KuramotoSimGroup attribute) (cubnm.sim.rww.rWWSimGroup attribute) (cubnm.sim.rwwex.rWWExSimGroup attribute) (cubnm.sim.wc.WCSimGroup attribute) setup_problem() (cubnm.optimize.CMAESOptimizer method) (cubnm.optimize.NSGA2Optimizer method) (cubnm.optimize.PymooOptimizer method) SimGroup (class in cubnm.sim.base) slice() (cubnm.sim.base.SimGroup method) (cubnm.sim.jr.JRSimGroup method) (cubnm.sim.kuramoto.KuramotoSimGroup method) (cubnm.sim.rww.rWWSimGroup method) (cubnm.sim.rwwex.rWWExSimGroup method) (cubnm.sim.wc.WCSimGroup method) state_names (cubnm.sim.jr.JRSimGroup attribute) (cubnm.sim.kuramoto.KuramotoSimGroup attribute) (cubnm.sim.rww.rWWSimGroup attribute) (cubnm.sim.rwwex.rWWExSimGroup attribute) (cubnm.sim.wc.WCSimGroup attribute) SUPPORTED_MAP_PARCS (in module cubnm.datasets) SUPPORTED_MAPS (in module cubnm.datasets) W WCSimGroup (class in cubnm.sim.wc)