Index _ | A | B | C | E | F | G | H | I | K | L | M | N | O | P | R | S | W _ _check_dt() (cubnm.sim.KuramotoSimGroup method) (cubnm.sim.rWWExSimGroup method) (cubnm.sim.rWWSimGroup method) (cubnm.sim.SimGroup method) _clean_micamics_bold() (in module cubnm.datasets) _clean_micamics_sc() (in module cubnm.datasets) _evaluate() (cubnm.optimize.BNMProblem method) _get_lut_full() (in module cubnm.datasets) _get_save_data() (cubnm.sim.KuramotoSimGroup method) (cubnm.sim.rWWExSimGroup method) (cubnm.sim.rWWSimGroup method) (cubnm.sim.SimGroup method) _get_test_configs() (cubnm.sim.KuramotoSimGroup class method) (cubnm.sim.rWWExSimGroup class method) (cubnm.sim.rWWSimGroup class method) (cubnm.sim.SimGroup class method) _get_test_instance() (cubnm.sim.KuramotoSimGroup class method) (cubnm.sim.rWWExSimGroup class method) (cubnm.sim.rWWSimGroup class method) (cubnm.sim.SimGroup class method) _get_X() (cubnm.optimize.BNMProblem method) _get_Xt() (cubnm.optimize.BNMProblem method) _problem_evaluate() (cubnm.sim.KuramotoSimGroup method) (cubnm.sim.rWWExSimGroup method) (cubnm.sim.rWWSimGroup method) (cubnm.sim.SimGroup method) _problem_init() (cubnm.sim.KuramotoSimGroup method) (cubnm.sim.rWWExSimGroup method) (cubnm.sim.rWWSimGroup method) (cubnm.sim.SimGroup method) _process_out() (cubnm.sim.KuramotoSimGroup method) (cubnm.sim.MultiSimGroupMixin method) (cubnm.sim.rWWExSimGroup method) (cubnm.sim.rWWSimGroup method) (cubnm.sim.SimGroup method) _set_default_params() (cubnm.sim.KuramotoSimGroup method) (cubnm.sim.rWWExSimGroup method) (cubnm.sim.rWWSimGroup method) (cubnm.sim.SimGroup method) _set_sim_params() (cubnm.optimize.BNMProblem method) A avail_gpus() (in module cubnm.utils) B batch_optimize() (in module cubnm.optimize) BayesOptimizer (class in cubnm.optimize) BNMProblem (class in cubnm.optimize) C calculate_fc() (in module cubnm.utils) calculate_fcd() (in module cubnm.utils) cdf_2d_2d_right() (in module cubnm.utils) clear() (cubnm.sim.KuramotoSimGroup method) (cubnm.sim.rWWExSimGroup method) (cubnm.sim.rWWSimGroup method) (cubnm.sim.SimGroup method) CMAESOptimizer (class in cubnm.optimize) create_multi_sim_group() (in module cubnm.sim) cubnm module cubnm.datasets module cubnm.optimize module cubnm.sim module cubnm.utils module E eval() (cubnm.optimize.BNMProblem method) F fc_corr_device() (in module cubnm.utils) fcd_ks_device() (in module cubnm.utils) G get_bw_params() (in module cubnm.utils) get_config() (cubnm.optimize.BayesOptimizer method) (cubnm.optimize.BNMProblem method) (cubnm.optimize.CMAESOptimizer method) (cubnm.optimize.GridOptimizer method) (cubnm.optimize.NSGA2Optimizer method) (cubnm.optimize.Optimizer method) (cubnm.optimize.PymooOptimizer method) (cubnm.sim.KuramotoSimGroup method) (cubnm.sim.rWWExSimGroup method) (cubnm.sim.rWWSimGroup method) (cubnm.sim.SimGroup method) get_noise() (cubnm.sim.KuramotoSimGroup method) (cubnm.sim.rWWExSimGroup method) (cubnm.sim.rWWSimGroup method) (cubnm.sim.SimGroup method) global_param_names (cubnm.sim.KuramotoSimGroup attribute) (cubnm.sim.rWWExSimGroup attribute) (cubnm.sim.rWWSimGroup attribute) GridOptimizer (class in cubnm.optimize) H has_cupy (in module cubnm.sim) (in module cubnm.utils) I is_jupyter() (in module cubnm.utils) K KuramotoSimGroup (class in cubnm.sim) L load_bold() (in module cubnm.datasets) load_maps() (in module cubnm.datasets) load_sc() (in module cubnm.datasets) M max_obj (cubnm.optimize.BayesOptimizer attribute) (cubnm.optimize.CMAESOptimizer attribute) (cubnm.optimize.NSGA2Optimizer attribute) model_name (cubnm.sim.KuramotoSimGroup attribute) (cubnm.sim.rWWExSimGroup attribute) (cubnm.sim.rWWSimGroup attribute) module cubnm cubnm.datasets cubnm.optimize cubnm.sim cubnm.utils MultiSimGroupMixin (class in cubnm.sim) N n_noise (cubnm.sim.KuramotoSimGroup attribute) (cubnm.sim.rWWExSimGroup attribute) (cubnm.sim.rWWSimGroup attribute) NSGA2Optimizer (class in cubnm.optimize) O optimize() (cubnm.optimize.BayesOptimizer method) (cubnm.optimize.CMAESOptimizer method) (cubnm.optimize.GridOptimizer method) (cubnm.optimize.NSGA2Optimizer method) (cubnm.optimize.Optimizer method) (cubnm.optimize.PymooOptimizer method) Optimizer (class in cubnm.optimize) P PymooOptimizer (class in cubnm.optimize) R regional_param_names (cubnm.sim.KuramotoSimGroup attribute) (cubnm.sim.rWWExSimGroup attribute) (cubnm.sim.rWWSimGroup attribute) run() (cubnm.sim.KuramotoSimGroup method) (cubnm.sim.MultiSimGroupMixin method) (cubnm.sim.rWWExSimGroup method) (cubnm.sim.rWWSimGroup method) (cubnm.sim.SimGroup method) rWWExSimGroup (class in cubnm.sim) rWWSimGroup (class in cubnm.sim) S save() (cubnm.optimize.BayesOptimizer method) (cubnm.optimize.CMAESOptimizer method) (cubnm.optimize.GridOptimizer method) (cubnm.optimize.NSGA2Optimizer method) (cubnm.optimize.Optimizer method) (cubnm.optimize.PymooOptimizer method) (cubnm.sim.KuramotoSimGroup method) (cubnm.sim.rWWExSimGroup method) (cubnm.sim.rWWSimGroup method) (cubnm.sim.SimGroup method) score() (cubnm.sim.KuramotoSimGroup method) (cubnm.sim.rWWExSimGroup method) (cubnm.sim.rWWSimGroup method) (cubnm.sim.SimGroup method) sel_state_var (cubnm.sim.KuramotoSimGroup attribute) (cubnm.sim.rWWExSimGroup attribute) (cubnm.sim.rWWSimGroup attribute) setup_problem() (cubnm.optimize.BayesOptimizer method) (cubnm.optimize.CMAESOptimizer method) (cubnm.optimize.NSGA2Optimizer method) (cubnm.optimize.PymooOptimizer method) SimGroup (class in cubnm.sim) slice() (cubnm.sim.KuramotoSimGroup method) (cubnm.sim.rWWExSimGroup method) (cubnm.sim.rWWSimGroup method) (cubnm.sim.SimGroup method) state_names (cubnm.sim.KuramotoSimGroup attribute) (cubnm.sim.rWWExSimGroup attribute) (cubnm.sim.rWWSimGroup attribute) W WORST_SCORES (in module cubnm.sim)