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cubnm documentation
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Contents:

  • Installation
  • Tutorials
    • Basics of brain network modeling and running an example simulation
    • Homogeneous model optimization using grid search
    • Homogeneous model optimization using an evolutionary approach
    • Map-based heterogeneous model optimization using an evolutionary approach
    • Node-based heterogeneous model optimization using an evolutionary approach
    • Batch running of multiple optimizations in parallel
  • Models
  • API References
    • cubnm.sim
      • cubnm.sim.base
      • cubnm.sim.jr
      • cubnm.sim.kuramoto
      • cubnm.sim.rww
      • cubnm.sim.rwwex
      • cubnm.sim.wc
    • cubnm.datasets
    • cubnm.optimize
    • cubnm.utils
  • Command Line Interface
  • Contributing a New Model
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cubnmΒΆ

  • cubnm.sim
    • cubnm.sim.base
    • cubnm.sim.jr
    • cubnm.sim.kuramoto
    • cubnm.sim.rww
    • cubnm.sim.rwwex
    • cubnm.sim.wc
  • cubnm.datasets
    • load_sc()
    • load_bold()
    • load_fc()
    • load_fcd()
    • load_maps()
  • cubnm.optimize
    • BNMProblem
    • Optimizer
    • GridOptimizer
    • PymooOptimizer
    • CMAESOptimizer
    • NSGA2Optimizer
    • batch_optimize()
  • cubnm.utils
    • cdf_2d_2d_right()
    • avail_gpus()
    • is_jupyter()
    • get_bw_params()
    • calculate_fc()
    • calculate_fcd()
    • fcd_ks_device()
    • fc_corr_device()
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